diff --git a/config/rootfiles/packages/pakfire3 b/config/rootfiles/packages/pakfire3
index effabc805..da902d5c0 100644
--- a/config/rootfiles/packages/pakfire3
+++ b/config/rootfiles/packages/pakfire3
@@ -34,6 +34,8 @@ usr/lib/pakfire/macros/build.macro
 usr/lib/pakfire/macros/cflags.macro
 usr/lib/pakfire/macros/constants.macro
 usr/lib/pakfire/macros/package-default.macro
+usr/lib/pakfire/macros/perl.macro
+usr/lib/pakfire/macros/python.macro
 usr/lib/pakfire/macros/quality-agent.macro
 usr/lib/pakfire/macros/systemd.macro
 usr/lib/pakfire/macros/templates.macro
@@ -50,21 +52,15 @@ usr/lib/python2.7/site-packages/pakfire/__version__.py
 usr/lib/python2.7/site-packages/pakfire/_lzma.so
 usr/lib/python2.7/site-packages/pakfire/_pakfire.so
 usr/lib/python2.7/site-packages/pakfire/actions.py
-usr/lib/python2.7/site-packages/pakfire/api.py
 usr/lib/python2.7/site-packages/pakfire/base.py
 usr/lib/python2.7/site-packages/pakfire/builder.py
 usr/lib/python2.7/site-packages/pakfire/cgroup.py
-usr/lib/python2.7/site-packages/pakfire/chroot.py
 usr/lib/python2.7/site-packages/pakfire/cli.py
-usr/lib/python2.7/site-packages/pakfire/client
-usr/lib/python2.7/site-packages/pakfire/client/__init__.py
-usr/lib/python2.7/site-packages/pakfire/client/base.py
-usr/lib/python2.7/site-packages/pakfire/client/builder.py
-usr/lib/python2.7/site-packages/pakfire/client/test.py
-usr/lib/python2.7/site-packages/pakfire/client/transport.py
+usr/lib/python2.7/site-packages/pakfire/client.py
 usr/lib/python2.7/site-packages/pakfire/compress.py
 usr/lib/python2.7/site-packages/pakfire/config.py
 usr/lib/python2.7/site-packages/pakfire/constants.py
+usr/lib/python2.7/site-packages/pakfire/daemon.py
 usr/lib/python2.7/site-packages/pakfire/distro.py
 usr/lib/python2.7/site-packages/pakfire/downloader.py
 usr/lib/python2.7/site-packages/pakfire/errors.py
@@ -82,6 +78,7 @@ usr/lib/python2.7/site-packages/pakfire/packages/lexer.py
 usr/lib/python2.7/site-packages/pakfire/packages/make.py
 usr/lib/python2.7/site-packages/pakfire/packages/packager.py
 usr/lib/python2.7/site-packages/pakfire/packages/solv.py
+usr/lib/python2.7/site-packages/pakfire/packages/tar.py
 usr/lib/python2.7/site-packages/pakfire/repository
 usr/lib/python2.7/site-packages/pakfire/repository/__init__.py
 usr/lib/python2.7/site-packages/pakfire/repository/base.py
@@ -94,8 +91,10 @@ usr/lib/python2.7/site-packages/pakfire/repository/remote.py
 usr/lib/python2.7/site-packages/pakfire/repository/system.py
 usr/lib/python2.7/site-packages/pakfire/satsolver.py
 usr/lib/python2.7/site-packages/pakfire/server.py
+usr/lib/python2.7/site-packages/pakfire/shell.py
 usr/lib/python2.7/site-packages/pakfire/system.py
 usr/lib/python2.7/site-packages/pakfire/transaction.py
+usr/lib/python2.7/site-packages/pakfire/transport.py
 usr/lib/python2.7/site-packages/pakfire/util.py
 usr/lib/quality-agent
 usr/lib/quality-agent/001-include-files
@@ -112,7 +111,6 @@ usr/lib/quality-agent/050-libs-x86_64
 usr/lib/quality-agent/050-nx
 usr/lib/quality-agent/050-relro
 usr/lib/quality-agent/050-rpaths
-usr/lib/quality-agent/090-python-hardlinks
 usr/lib/quality-agent/095-directory-layout
 usr/lib/quality-agent/qa-include
 var/ipfire/backup/addons/includes/pakfire3
diff --git a/lfs/pakfire3 b/lfs/pakfire3
index 61dd988b4..8fb810d88 100644
--- a/lfs/pakfire3
+++ b/lfs/pakfire3
@@ -24,7 +24,7 @@
 
 include Config
 
-VER        = 0.9.23
+VER        = 0.9.25
 
 THISAPP    = pakfire-$(VER)
 DL_FILE    = $(THISAPP).tar.gz
@@ -32,7 +32,7 @@ DL_FROM    = http://source.ipfire.org/releases/pakfire/
 DIR_APP    = $(DIR_SRC)/$(THISAPP)
 TARGET     = $(DIR_INFO)/$(THISAPP)
 PROG	   = pakfire3
-PAK_VER    = 2
+PAK_VER    = 4
 
 DEPS       = "libsolv pycurl pygpgme python-progressbar python-xattr sqlite urlgrabber"
 
@@ -44,7 +44,7 @@ objects = $(DL_FILE)
 
 $(DL_FILE) = $(DL_FROM)/$(DL_FILE)
 
-$(DL_FILE)_MD5 = 10e6dd51c917faa8bd2e7435495de211
+$(DL_FILE)_MD5 = 8932670f3ac7c7ab1892b719a078de31
 
 install : $(TARGET)
 
@@ -78,6 +78,7 @@ $(TARGET) : $(patsubst %,$(DIR_DL)/%,$(objects))
 	@$(PREBUILD)
 	@rm -rf $(DIR_APP) && cd $(DIR_SRC) && tar axf $(DIR_DL)/$(DL_FILE)
 	cd $(DIR_APP) && patch -Np1 < $(DIR_SRC)/src/patches/pakfire3-changes-for-ipfire2.diff
+	cd $(DIR_APP) && patch -Np1 < $(DIR_SRC)/src/patches/pakfire-database-Add-inst_size-column-when-creating-new-data.patch
 	cd $(DIR_APP) && make $(MAKETUNING)
 	cd $(DIR_APP) && make install
 	rm -vf /usr/bin/pakfire3
diff --git a/src/patches/pakfire-database-Add-inst_size-column-when-creating-new-data.patch b/src/patches/pakfire-database-Add-inst_size-column-when-creating-new-data.patch
new file mode 100644
index 000000000..f366f216d
--- /dev/null
+++ b/src/patches/pakfire-database-Add-inst_size-column-when-creating-new-data.patch
@@ -0,0 +1,24 @@
+From 0d6d6fd2b89c609a6f8daff225c6c98b54a041cc Mon Sep 17 00:00:00 2001
+From: Michael Tremer <michael.tremer@ipfire.org>
+Date: Mon, 4 Mar 2013 17:18:52 +0100
+Subject: [PATCH] database: Add inst_size column when creating new databases.
+
+---
+ python/pakfire/repository/database.py | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/python/pakfire/repository/database.py b/python/pakfire/repository/database.py
+index fc8a1a9..d8751e9 100644
+--- a/python/pakfire/repository/database.py
++++ b/python/pakfire/repository/database.py
+@@ -190,6 +190,7 @@ class DatabaseLocal(Database):
+ 				groups		TEXT,
+ 				filename	TEXT,
+ 				size		INTEGER,
++				inst_size	INTEGER,
+ 				hash1		TEXT,
+ 				provides	TEXT,
+ 				requires	TEXT,
+-- 
+1.7.11.7
+